If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ), 'gf_id' => 'HOM05D000897', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000897' ), 'data_identifier' => 'HOM05D000897', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000897', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29260' => 'bna', 'A04p34830' => 'bna', 'A05p00660' => 'bna', 'A08p20850' => 'bna', 'A09p17530' => 'bna', 'A09p17550' => 'bna', 'A09p18950' => 'bna', 'A09p18990' => 'bna', 'A09p56220' => 'bna', 'A09p65520' => 'bna', 'A09p67820' => 'bna', 'Aa31LG10G17060' => 'aar', 'Aa31LG1G28490' => 'aar', 'Aa31LG1G5740' => 'aar', 'Aa31LG2G10010' => 'aar', 'Aa31LG2G11360' => 'aar', 'Aa31LG2G9980' => 'aar', 'Actinidia01495' => 'ach', 'Actinidia01672' => 'ach', 'Actinidia01673' => 'ach', 'Actinidia01699' => 'ach', 'Actinidia08158' => 'ach', 'Actinidia08159' => 'ach', 'Actinidia13503' => 'ach', 'Actinidia15051' => 'ach', 'Ah.06g196230' => 'amhyb', 'Ah.11g045660' => 'amhyb', 'AL1G19860' => 'aly', 'AL1G66490' => 'aly', 'AL1G66620' => 'aly', 'AL2G16220' => 'aly', 'AL2G16250' => 'aly', 'AL4G46730' => 'aly', 'AL7G26710' => 'aly', 'Aqoxy184s005' => 'aox', 'Aqoxy2G02624' => 'aox', 'Aqoxy3G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.96F7ZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9HBV2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B1GHBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK4NNE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ3A81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNQB38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N6N04K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QBM7RU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DX97' => 'arhy', 'AT1G09350' => 'ath', 'AT1G56600' => 'ath', 'AT1G56660' => 'ath', 'AT1G60450' => 'ath', 'AT1G60470' => 'ath', 'AT2G47180' => 'ath', 'AT4G26250' => 'ath', 'AT5G23790' => 'ath', 'AT5G30500' => 'ath', 'ATR0693G188' => 'atr', 'ATR1091G106' => 'atr', 'Atru.chr11.2048' => 'acertr', 'Atru.chr2.223' => 'acertr', 'Atru.chr2.225' => 'acertr', 'Atru.chr2.227' => 'acertr', 'Atru.chr2.228' => 'acertr', 'Atru.chr4.3102' => 'acertr', 'Atru.chr5.929' => 'acertr', 'Atru.chr5.930' => 'acertr', 'AUR62000431' => 'cqu', 'AUR62000432' => 'cqu', 'AUR62006408' => 'cqu', 'AUR62006777' => 'cqu', 'AUR62006778' => 'cqu', 'AUR62011750' => 'cqu', 'AUR62024594' => 'cqu', 'AUR62029756' => 'cqu', 'BcaB02g08797' => 'bca', 'BcaB03g12497' => 'bca', 'BcaB06g29460' => 'bca', 'BcaB07g31133' => 'bca', 'BcaB07g31135' => 'bca', 'BcaB07g31215' => 'bca', 'BcaB07g31216' => 'bca', 'BcaC02g06962' => 'bca', 'BcaC02g12588' => 'bca', 'BcaC04g22073' => 'bca', 'BcaC04g22227' => 'bca', 'BcaC04g22228' => 'bca', 'BcaC05g27116' => 'bca', 'BcaC07g38226' => 'bca', 'BcaC07g38227' => 'bca', 'BcaC07g40918' => 'bca', 'BcaC07g40921' => 'bca', 'BcaC07g41885' => 'bca', 'BcaC07g41886' => 'bca', 'BcaC07g41889' => 'bca', 'BcaC07g41895' => 'bca', 'BcaC09g49409' => 'bca', 'BcaNung02434' => 'bca', 'BcaNung02438' => 'bca', 'BolC1t03660H' => 'bol', 'BolC1t03661H' => 'bol', 'BolC4t21708H' => 'bol', 'BolC4t28747H' => 'bol', 'BolC5t31735H' => 'bol', 'BolC8t48655H' => 'bol', 'BolC8t51490H' => 'bol', 'BolC8t52487H' => 'bol', 'BolC8t52750H' => 'bol', 'BolC9t55089H' => 'bol', 'BolC9t55090H' => 'bol', 'BolC9t55303H' => 'bol', 'BolC9t55305H' => 'bol', 'BraA01t03058Z' => 'bra', 'BraA05t19064Z' => 'bra', 'BraA08t34039Z' => 'bra', 'BraA09t37378Z' => 'bra', 'BraA09t37379Z' => 'bra', 'BraA09t37515Z' => 'bra', 'BraA09t37517Z' => 'bra', 'BraA09t41016Z' => 'bra', 'BraA09t41897Z' => 'bra', 'BraA09t42115Z' => 'bra', 'BraSC79t46674Z' => 'bra', 'C01p37030' => 'bna', 'C04p00760' => 'bna', 'C04p72600' => 'bna', 'C05p29990' => 'bna', 'C08p09800' => 'bna', 'C08p39170' => 'bna', 'C08p49500' => 'bna', 'C08p52160' => 'bna', 'C09p21830' => 'bna', 'C09p21840' => 'bna', 'C09p23800' => 'bna', 'C09p23820' => 'bna', 'CAN.G100.19' => 'can', 'CAN.G1076.44' => 'can', 'CAN.G1314.1' => 'can', 'CAN.G274.28' => 'can', 'CAN.G358.49' => 'can', 'CAN.G53.7' => 'can', 'CANSAT01G0435' => 'cansat', 'CANSAT25G1493' => 'cansat', 'CANSAT54G0646' => 'cansat', 'CANSAT78G0843' => 'cansat', 'CARHR009320' => 'chi', 'CARHR052560' => 'chi', 'CARHR054910' => 'chi', 'CARHR142570' => 'chi', 'CARHR185540' => 'chi', 'CARHR285620' => 'chi', 'Carub.0001s0869' => 'cru', 'Carub.0002s0486' => 'cru', 'Carub.0002s0489' => 'cru', 'Carub.0002s0724' => 'cru', 'Carub.0002s0730' => 'cru', 'Carub.0004s2992' => 'cru', 'Carub.0007s0246' => 'cru', 'Carub.0007s1470' => 'cru', 'Ca_09228_v3' => 'car', 'Ca_09288_v3' => 'car', 'Ca_10188_v3' => 'car', 'CBR_g31702' => 'cbr', 'CBR_g39922' => 'cbr', 'Cc02_g35320' => 'ccan', 'Cc02_g35330' => 'ccan', 'Cc02_g35340' => 'ccan', 'Cc02_g35350' => 'ccan', 'Cc02_g35360' => 'ccan', 'Cc02_g35370' => 'ccan', 'Cc02_g35380' => 'ccan', 'Cc03_g00450' => 'ccan', 'Cc11_g15250' => 'ccan', 'CDE02G2580' => 'cde', 'CDE02G4733' => 'cde', 'CDE08G1299' => 'cde', 'Cfa004854' => 'cfa', 'Cfa004855' => 'cfa', 'Cfa006709' => 'cfa', 'Cfa006710' => 'cfa', 'Cfa009165' => 'cfa', 'Cfa015691' => 'cfa', 'Cfa015693' => 'cfa', 'Cfa024545' => 'cfa', 'Cfa025308' => 'cfa', 'Ciclev10001308m.g' => 'ccl', 'Ciclev10005406m.g' => 'ccl', 'Ciclev10006683m.g' => 'ccl', 'Ciclev10021027m.g' => 'ccl', 'Ciclev10032043m.g' => 'ccl', 'CiPaw.01G133300' => 'cil', 'CiPaw.03G101800' => 'cil', 'CiPaw.05G152700' => 'cil', 'CiPaw.07G031900' => 'cil', 'CiPaw.07G032100' => 'cil', 'CiPaw.07G032300' => 'cil', 'CiPaw.07G032500' => 'cil', 'CiPaw.07G121000' => 'cil', 'CiPaw.08G086300' => 'cil', 'CiPaw.08G153500' => 'cil', 'CiPaw.08G153800' => 'cil', 'ClCG01G010820' => 'cla', 'ClCG05G025390' => 'cla', 'ClCG06G004340' => 'cla', 'ClCG10G011650' => 'cla', 'COL.COLO4_05520' => 'col', 'COL.COLO4_23186' => 'col', 'COL.COLO4_24192' => 'col', 'COL.COLO4_34554' => 'col', 'COL.COLO4_34555' => 'col', 'COL.COLO4_34556' => 'col', 'Cpa.g.sc145.23' => 'cpa', 'Cpa.g.sc146.68' => 'cpa', 'Cpa.g.sc48.195' => 'cpa', 'Cpa.g.sc69.62' => 'cpa', 'CsaV3_1G015730' => 'csa', 'CsaV3_3G031720' => 'csa', 'CsaV3_5G031520' => 'csa', 'CsaV3_6G000050' => 'csa', 'CSS0001107' => 'camsi', 'CSS0004162' => 'camsi', 'CSS0004766' => 'camsi', 'CSS0011962' => 'camsi', 'CSS0012174' => 'camsi', 'CSS0016796' => 'camsi', 'CSS0019367' => 'camsi', 'CSS0025327' => 'camsi', 'CSS0025597' => 'camsi', 'CSS0034475' => 'camsi', 'CSS0035212' => 'camsi', 'CSS0042907' => 'camsi', 'CSS0045119' => 'camsi', 'CSS0047751' => 'camsi', 'CSS0048028' => 'camsi', 'DCAR_002910' => 'dca', 'DCAR_002912' => 'dca', 'DCAR_002913' => 'dca', 'DCAR_002914' => 'dca', 'DCAR_002915' => 'dca', 'DCAR_007083' => 'dca', 'DCAR_012322' => 'dca', 'DCAR_029329' => 'dca', 'DCAR_029332' => 'dca', 'Dinv15281' => 'din', 'Dinv24481' => 'din', 'Dinv24836' => 'din', 'Dinv30919' => 'din', 'Dinv30920' => 'din', 'Dinv30921' => 'din', 'Dinv44244' => 'din', 'Duzib106G2077' => 'dzi', 'Duzib133G1272' => 'dzi', 'Duzib138G0391' => 'dzi', 'Duzib151G0086' => 'dzi', 'Duzib151G1153' => 'dzi', 'Duzib177G1112' => 'dzi', 'Duzib251G0938' => 'dzi', 'ECA233G2684' => 'eca', 'ECA233G4236' => 'eca', 'ECA233G6243' => 'eca', 'ECA247G2611' => 'eca', 'EL10Ac4g09506' => 'bvu', 'EL10Ac4g09508' => 'bvu', 'EL10As5g23597' => 'bvu', 'Eucgr.B01791' => 'egr', 'Eucgr.B01793' => 'egr', 'Eucgr.B03987' => 'egr', 'Eucgr.H00902' => 'egr', 'Eucgr.H00906' => 'egr', 'Eucgr.H02584' => 'egr', 'Eucgr.H03312' => 'egr', 'Eucgr.K03563' => 'egr', 'Eucgr.L00234' => 'egr', 'Eucgr.L00235' => 'egr', 'Eucgr.L00240' => 'egr', 'Eucgr.L00241' => 'egr', 'Eucgr.L00243' => 'egr', 'Eucgr.L00245' => 'egr', 'Eucgr.L00248' => 'egr', 'Eucgr.L00249' => 'egr', 'Eucgr.L00250' => 'egr', 'Eucgr.L00251' => 'egr', 'Eucgr.L01804' => 'egr', 'Eucgr.L01806' => 'egr', 'Eucgr.L03185' => 'egr', 'Eucgr.L03244' => 'egr', 'FAN02G1381' => 'fan', 'FAN02G3708' => 'fan', 'FAN05G4352' => 'fan', 'FAN07G0229' => 'fan', 'FAN07G1449' => 'fan', 'FAN09G0223' => 'fan', 'FAN09G3074' => 'fan', 'FAN12G0205' => 'fan', 'FAN12G0812' => 'fan', 'FAN14G2868' => 'fan', 'FAN15G1611' => 'fan', 'FAN17G0460' => 'fan', 'FAN17G1415' => 'fan', 'FAN19G0383' => 'fan', 'FAN20G2567' => 'fan', 'FAN22G1087' => 'fan', 'FAN24G1087' => 'fan', 'FAN26G0205' => 'fan', 'FAN27G1359' => 'fan', 'FAN28G1928' => 'fan', 'FvH4_1g26560' => 'fve', 'FvH4_4g20790' => 'fve', 'FvH4_4g34160' => 'fve', 'FvH4_6g07920' => 'fve', 'FvH4_6g07930' => 'fve', 'Glyma.03G222000' => 'gma', 'Glyma.03G229800' => 'gma', 'Glyma.10G145300' => 'gma', 'Glyma.19G219100' => 'gma', 'Glyma.19G227800' => 'gma', 'Glyma.20G094500' => 'gma', 'Gohir.A07G130000' => 'ghi', 'Gohir.A08G204400' => 'ghi', 'Gohir.A09G241300' => 'ghi', 'Gohir.A11G107800' => 'ghi', 'Gohir.A12G122600' => 'ghi', 'Gohir.A13G113200' => 'ghi', 'Gohir.A13G176700' => 'ghi', 'Gohir.D07G134200' => 'ghi', 'Gohir.D08G221700' => 'ghi', 'Gohir.D09G242000' => 'ghi', 'Gohir.D11G112500' => 'ghi', 'Gohir.D13G116300' => 'ghi', 'Gohir.D13G116400' => 'ghi', 'Gohir.D13G183200' => 'ghi', 'Gorai.001G145800' => 'gra', 'Gorai.004G235400' => 'gra', 'Gorai.006G265600' => 'gra', 'Gorai.007G120900' => 'gra', 'Gorai.013G130800' => 'gra', 'Gorai.013G130900' => 'gra', 'Gorai.013G208500' => 'gra', 'GSVIVG01013763001' => 'vvi', 'GSVIVG01017634001' => 'vvi', 'GSVIVG01028174001' => 'vvi', 'GSVIVG01028176001' => 'vvi', 'GSVIVG01031274001' => 'vvi', 'GSVIVG01031276001' => 'vvi', 'GSVIVG01031278001' => 'vvi', 'GSVIVG01031280001' => 'vvi', 'GSVIVG01031282001' => 'vvi', 'GSVIVG01031284001' => 'vvi', 'GSVIVG01031285001' => 'vvi', 'GSVIVG01034938001' => 'vvi', 'HanXRQChr08g0217911' => 'han', 'HanXRQChr08g0218161' => 'han', 'HanXRQChr08g0218171' => 'han', 'HanXRQChr10g0284881' => 'han', 'HanXRQChr12g0368461' => 'han', 'Haze_00828' => 'cav', 'Haze_00829' => 'cav', 'Haze_04052' => 'cav', 'Haze_04053' => 'cav', 'Haze_05100' => 'cav', 'Haze_12198' => 'cav', 'Hma1.2p1_0008F-1.1_g005350' => 'hma', 'Hma1.2p1_0045F.1_g026500' => 'hma', 'Hma1.2p1_0045F.1_g026510' => 'hma', 'Hma1.2p1_0052F.1_g030610' => 'hma', 'Hma1.2p1_0276F.1_g111180' => 'hma', 'Hma1.2p1_0536F.1_g173930' => 'hma', 'Hma1.2p1_0587F.1_g184130' => 'hma', 'Hma1.2p1_0669F.1_g200055' => 'hma', 'Hma1.2p1_1096F.1_g256650' => 'hma', 'Hma1.2p1_1553F.1_g290220' => 'hma', 'Hma1.2p1_1808F.1_g303420' => 'hma', 'Hma1.2p1_2209F.1_g317140' => 'hma', 'Hma1.2p1_2996F.1_g331480' => 'hma', 'Hma1.2p1_2996F.1_g331490' => 'hma', 'HPP92_012779' => 'vpl', 'HPP92_017020' => 'vpl', 'HPP92_017021' => 'vpl', 'HPP92_026020' => 'vpl', 'HPP92_027739' => 'vpl', 'Hund07297' => 'sun', 'Hund07298' => 'sun', 'Hund21855' => 'sun', 'Hund21856' => 'sun', 'Lalb_Chr02g0147671' => 'lal', 'Lalb_Chr15g0077961' => 'lal', 'Lalb_Chr18g0046541' => 'lal', 'Lj1g0002116' => 'lja', 'Lj1g0025198' => 'lja', 'Lj2C1211T6' => 'lonja', 'Lj3C836T4' => 'lonja', 'Lj5A325G70' => 'lonja', 'Lj5g0012442' => 'lja', 'Lj6A807T87' => 'lonja', 'Lju99A10T41' => 'lonja', 'Lju99A11T80' => 'lonja', 'Lsat_1_v5_gn_8_23120' => 'lsa', 'Lsat_1_v5_gn_9_201' => 'lsa', 'Manes.01G231500' => 'mes', 'Manes.03G208800' => 'mes', 'Manes.05G012000' => 'mes', 'Manes.08G109300' => 'mes', 'Manes.08G109400' => 'mes', 'Manes.09G179100' => 'mes', 'Manes.12G027401' => 'mes', 'Manes.13G029000' => 'mes', 'Manes.15G003200' => 'mes', 'Mapoly0003s0193' => 'mpo', 'MBI10_g28012_MAGBIO' => 'mbi', 'MBI10_g42215_MAGBIO' => 'mbi', 'MBI16_g27087_MAGBIO' => 'mbi', 'MBI18_g27391_MAGBIO' => 'mbi', 'MD04G1190900' => 'mdo', 'MD06G1011500' => 'mdo', 'MD09G1288100' => 'mdo', 'MD11G1070000' => 'mdo', 'MD13G1093700' => 'mdo', 'MD13G1147700' => 'mdo', 'MD16G1095000' => 'mdo', 'MD16G1147600' => 'mdo', 'MD17G1280400' => 'mdo', 'Medtr1g084660' => 'mtr', 'Medtr1g084670' => 'mtr', 'Medtr4g132185' => 'mtr', 'Medtr7g109920' => 'mtr', 'Medtr7g111850' => 'mtr', 'MELO3C011991.2' => 'cme', 'MELO3C012925.2' => 'cme', 'MELO3C021249.2' => 'cme', 'MELO3C025521.2' => 'cme', 'Migut.B00857' => 'egut', 'Migut.B00921' => 'egut', 'Migut.B00922' => 'egut', 'Migut.B00924' => 'egut', 'Migut.B00925' => 'egut', 'Migut.D00048' => 'egut', 'Migut.E00169' => 'egut', 'Migut.L01457' => 'egut', 'Migut.N00953' => 'egut', 'MSTRG.13366' => 'ama', 'MSTRG.18077' => 'ama', 'MSTRG.2400' => 'ama', 'MSTRG.27924' => 'ama', 'Nitab4.5_0000136g0290' => 'nta', 'Nitab4.5_0000178g0340' => 'nta', 'Nitab4.5_0000222g0170' => 'nta', 'Nitab4.5_0001013g0090' => 'nta', 'Nitab4.5_0001617g0060' => 'nta', 'Nitab4.5_0003044g0080' => 'nta', 'Nitab4.5_0003324g0150' => 'nta', 'Nitab4.5_0008397g0020' => 'nta', 'Nitab4.5_0011298g0020' => 'nta', 'Nn3g16843' => 'nnu', 'Nn3g16973' => 'nnu', 'Nn3g21832' => 'nnu', 'Nn4g22688' => 'nnu', 'Nn4g22743' => 'nnu', 'Nn4g25450' => 'nnu', 'Nn5g26911' => 'nnu', 'Oeu000077.1' => 'oeu', 'Oeu000078.1' => 'oeu', 'Oeu000079.1' => 'oeu', 'Oeu000080.1' => 'oeu', 'Oeu001733.3' => 'oeu', 'Oeu009095.1' => 'oeu', 'Oeu014219.1' => 'oeu', 'Oeu019840.1' => 'oeu', 'Oeu024969.1' => 'oeu', 'Oeu038055.1' => 'oeu', 'Oeu052940.1' => 'oeu', 'Oeu054061.1' => 'oeu', 'Oeu056407.1' => 'oeu', 'Oeu056730.1' => 'oeu', 'Os03g0316200' => 'osa', 'Os07g0687900' => 'osa', 'Peaxi162Scf00008g03414' => 'pax', 'Peaxi162Scf00010g01210' => 'pax', 'Peaxi162Scf00058g02212' => 'pax', 'Peaxi162Scf00064g00127' => 'pax', 'Peaxi162Scf00357g00616' => 'pax', 'Peaxi162Scf00357g00631' => 'pax', 'Peaxi162Scf00366g00813' => 'pax', 'Peaxi162Scf00770g00316' => 'pax', 'PGR031G1459' => 'pgr', 'PGR031G3620' => 'pgr', 'PGR083G0143' => 'pgr', 'PGR083G0285' => 'pgr', 'PGR083G0472' => 'pgr', 'PGR083G0630' => 'pgr', 'PGR083G1194' => 'pgr', 'PGR083G1275' => 'pgr', 'PGR083G1903' => 'pgr', 'PGR083G2304' => 'pgr', 'PGR102G0804' => 'pgr', 'PGSC0003DMG400003522' => 'stu', 'PGSC0003DMG400005216' => 'stu', 'PGSC0003DMG400015490' => 'stu', 'PGSC0003DMG400046135' => 'stu', 'Phvul.001G215300' => 'pvu', 'Phvul.001G223700' => 'pvu', 'Phvul.007G203400' => 'pvu', 'Potri.002G191600' => 'ptr', 'Potri.005G006800' => 'ptr', 'Potri.008G101000' => 'ptr', 'Potri.008G189400' => 'ptr', 'Potri.010G042000' => 'ptr', 'Potri.010G150400' => 'ptr', 'Potri.013G005800' => 'ptr', 'Potri.013G005900' => 'ptr', 'Potri.014G116800' => 'ptr', 'Prupe.1G111300' => 'ppe', 'Prupe.1G251600' => 'ppe', 'Prupe.3G005100' => 'ppe', 'Prupe.6G309400' => 'ppe', 'Prupe.8G258200' => 'ppe', 'Psat3g018520' => 'psa', 'Psat6g153600' => 'psa', 'PSO063G4335' => 'pso', 'PSO210G5340' => 'pso', 'PSO478G1831' => 'pso', 'PSO761G0194' => 'pso', 'PSO832G1559' => 'pso', 'QL01p053679' => 'qlo', 'QL02p100857' => 'qlo', 'QL03p017124' => 'qlo', 'QL03p017136' => 'qlo', 'QL03p017154' => 'qlo', 'QL03p017162' => 'qlo', 'QL03p017402' => 'qlo', 'QL03p017416' => 'qlo', 'QL03p017428' => 'qlo', 'QL03p017434' => 'qlo', 'QL03p017449' => 'qlo', 'QL03p017637' => 'qlo', 'QL03p017740' => 'qlo', 'QL03p059787' => 'qlo', 'QL03p059793' => 'qlo', 'QL06p013345' => 'qlo', 'QL12p018665' => 'qlo', 'RcHm_v2.0_Chr3g0457621' => 'rch', 'RcHm_v2.0_Chr3g0457631' => 'rch', 'RcHm_v2.0_Chr3g0486641' => 'rch', 'RcHm_v2.0_Chr4g0426261' => 'rch', 'RcHm_v2.0_Chr4g0443671' => 'rch', 'RcHm_v2.0_Chr6g0293551' => 'rch', 'Rhsim01G0129900' => 'rsi', 'Rhsim01G0130000' => 'rsi', 'Rhsim04G0243200' => 'rsi', 'Rhsim04G0243400' => 'rsi', 'Rhsim04G0243600' => 'rsi', 'Rhsim05G0129900' => 'rsi', 'Rhsim11G0098800' => 'rsi', 'Rhsim12G0116400' => 'rsi', 'Sabra08G0076300' => 'sbr', 'Sabra08G0143800' => 'sbr', 'Sabra10G0025400' => 'sbr', 'Sabra10G0115800' => 'sbr', 'Sabra13G0005000' => 'sbr', 'Sabra13G0005100' => 'sbr', 'Sabra14G0086600' => 'sbr', 'Sabra18G0027100' => 'sbr', 'SalBow3G0656' => 'sbo', 'SalBow3G1140' => 'sbo', 'SalBow7G0690' => 'sbo', 'SalBow7G2696' => 'sbo', 'SalBow8G1062' => 'sbo', 'Sc05g0000240' => 'sci', 'Sc06g0005670' => 'sci', 'Sc06g0005680' => 'sci', 'Sc16g0009230' => 'sci', 'Sed0012529' => 'sed', 'Sed0015729' => 'sed', 'Sed0020355' => 'sed', 'Sed0024287' => 'sed', 'Sed0026246' => 'sed', 'SEGI_00169' => 'sgi', 'SEGI_12108' => 'sgi', 'SEGI_13761' => 'sgi', 'SEGI_15102' => 'sgi', 'SEGI_15591' => 'sgi', 'SEGI_16771' => 'sgi', 'SEGI_17017' => 'sgi', 'SEGI_19250' => 'sgi', 'SEGI_19303' => 'sgi', 'SEGI_20149' => 'sgi', 'SEGI_21111' => 'sgi', 'SEGI_23317' => 'sgi', 'SEGI_29212' => 'sgi', 'SEGI_32644' => 'sgi', 'SEGI_37170' => 'sgi', 'SEGI_41505' => 'sgi', 'SGA_v2.0_scaffold37G14577' => 'sas', 'SGA_v2.0_scaffold446G51744' => 'sas', 'SGA_v2.0_scaffold80G25712' => 'sas', 'SHI24998' => 'shi', 'SMO200G0245' => 'smo', 'SMO353G0299' => 'smo', 'Solyc01g079170.3' => 'sly', 'Solyc01g100830.2' => 'sly', 'Solyc02g062590.3' => 'sly', 'Solyc02g084980.3' => 'sly', 'Sopen01g030940' => 'spe', 'Sopen01g044330' => 'spe', 'Sopen02g013610' => 'spe', 'Sopen02g029650' => 'spe', 'Sp1g07960' => 'spa', 'Sp2g04260' => 'spa', 'Sp2g04300' => 'spa', 'Sp2g04310' => 'spa', 'Sp2g06100' => 'spa', 'Sp4g29170' => 'spa', 'SpUn0399_0010' => 'spa', 'SpUn0399_0020' => 'spa', 'TAR365G1246' => 'tar', 'TAR371G0063' => 'tar', 'TAR622G0051' => 'tar', 'TAR629G0491' => 'tar', 'TAR633G1235' => 'tar', 'THA.LOC104802138' => 'tha', 'THA.LOC104805770' => 'tha', 'THA.LOC104809685' => 'tha', 'THA.LOC104816854' => 'tha', 'THA.LOC104817444' => 'tha', 'THA.LOC104819456' => 'tha', 'THA.LOC104820112' => 'tha', 'THA.LOC104820533' => 'tha', 'THA.LOC104827104' => 'tha', 'Thecc.01G319800' => 'tca', 'Thecc.02G252300' => 'tca', 'Thecc.04G307600' => 'tca', 'Thecc.04G307700' => 'tca', 'Thecc.05G326200' => 'tca', 'Thhalv10001530m.g' => 'esa', 'Thhalv10004562m.g' => 'esa', 'Thhalv10008154m.g' => 'esa', 'Thhalv10009767m.g' => 'esa', 'Thhalv10023585m.g' => 'esa', 'Thhalv10023858m.g' => 'esa', 'Thhalv10024122m.g' => 'esa', 'Thhalv10027432m.g' => 'esa', 'TPR.G1657' => 'tpr', 'TPR.G18339' => 'tpr', 'TPR.G2643' => 'tpr', 'TPR.G4143' => 'tpr', 'TWI09G0800' => 'twi', 'TWI14G1229' => 'twi', 'TWI36G0867' => 'twi', 'TWI36G1719' => 'twi', 'TWI56G1424' => 'twi', 'TWI59G0310' => 'twi', 'TWI75G0902' => 'twi', 'unitig_22.g6938' => 'ugi', 'unitig_699.g19939' => 'ugi', 'unitig_736.g22927' => 'ugi', 'unitig_747.g21143' => 'ugi', 'unitig_747.g21327' => 'ugi', 'unitig_749.g13354' => 'ugi', 'unitig_8.g2921' => 'ugi', 'unitig_8.g2922' => 'ugi', 'unitig_8.g3151' => 'ugi', 'vmacro01589' => 'vma', 'vmacro07976' => 'vma', 'vmacro16236' => 'vma', 'vmacro19777' => 'vma', 'VMungo0720G2035' => 'vmu', 'VMungo1383G0640' => 'vmu', 'VMungo1383G2678' => 'vmu', 'Zm00001eb015130' => 'zma', 'Zm00001eb331150' => 'zma', 'Zm00001eb395600' => 'zma' ) $gf_id = 'HOM05D000897' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000897' ) $data_identifier = 'HOM05D000897' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 3, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 3, 'cfa' => (int) 9, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 22, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 6, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 12, 'han' => (int) 5, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 6, 'lsa' => (int) 2, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 4, 'nta' => (int) 9, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 2, 'pax' => (int) 8, 'pgr' => (int) 11, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 9, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 5, 'qlo' => (int) 17, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 16, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1